About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2648336_2649085_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2648336 - 2649085
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCGGC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
GTTTCCAACACT
Flanking Amino Acid:
DGDRAMCGSYSFTWSAARTD
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.2
61.5
44.8
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
42.2
-0.9
3.3
59.3
45.5
Minor BPS
49.1
0.01
2.3
77.67
44.4

Associated Gene:

Gene:
FAM83G
Ensembl Gene ID:
ENSAPLG00000012644
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013165
2638596 - 2653579
14984