About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2663029_2663521_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2663029 - 2663521
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTCTCGCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGGAAT
U12 Branch Point Sequence:
CTCTCGCCCACA
Flanking Amino Acid:
LAGQDMAWWPIGASLFASSE
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
40.7
-0.5
1.6
41.1
47.6
Major PPT
71.4
0.48
0.8
64.4
31.1
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
37.3
-1
2.6
51.63
46.1

Associated Gene:

Gene:
SLC5A10
Ensembl Gene ID:
ENSAPLG00000011963
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038447
2630124 - 2664150
34027
ENSAPLT00000012471
2630124 - 2664150
34027
ENSAPLT00000047576
2651728 - 2664150
12423