About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2663594_2664039_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2663594 - 2664039
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CTGTGCTCATCT
Flanking Amino Acid:
FSLNIAVGIWSSCRVNRNTV
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
81.8
0.72
0.7
76.7
25.3
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
46.9
-0.1
2.2
67.69
48.8

Associated Gene:

Gene:
SLC5A10
Ensembl Gene ID:
ENSAPLG00000011963
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047576
2651728 - 2664150
12423
ENSAPLT00000038447
2630124 - 2664150
34027
ENSAPLT00000012471
2630124 - 2664150
34027