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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2669216_2671451_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2669216 - 2671451
Intron Length:
2236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTACG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
IVAKSPASAKRAQSFAERLR
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.4
40.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.5
0.8
0.7
79.8
25.8
Minor 5ss
29.2
-2.4
2.8
33.6
41.8
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011752
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012283
2667053 - 2680215
13163