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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2671508_2674748_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2671508 - 2674748
Intron Length:
3241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTACTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TGTTATTTACTA
Flanking Amino Acid:
PFLLQYIQEEIPDYRNAVIV
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
83.3
0.75
0.8
77.9
35
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
55.5
0.17
1.8
68.68
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011752
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012283
2667053 - 2680215
13163