Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2693456_2693592_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2693456 - 2693592

Intron Length:

137

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGGAGG

5'SS Class:

major

3'SS Sequence:

CCTCTTCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTGAAT

U12 Branch Point Sequence:

GGTGGCTGAATC

Flanking Amino Acid:

SVFFESMPYKVNPKTGYIDY

Intron Amino Acid Position:

175

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

60.4

45.8

Major BPS

47.7

-0.1

1.6

57.6

45.8

Major PPT

0.61

0.7

68.9

31.6

Minor 5ss

24.8

-2.9

3.1

30.1

43.2

Minor BPS

-0.2

56.66

41.9

Associated Gene:

Gene:

SHMT1

Ensembl Gene ID:

ENSAPLG00000011293

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036779

2692112 - 2696514

4403

ENSAPLT00000011777

2692112 - 2695818

3707