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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2694059_2694282_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2694059 - 2694282
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCCGAG
5'SS Class:
major
3'SS Sequence:
TCCCCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
GCCTGCTGAGCC
Flanking Amino Acid:
CRAGMIFYRKGTRSVDPKTG
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.2
50.4
42.6
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
74.2
0.55
0.7
68.7
25
Minor 5ss
34.7
-1.7
3.5
46
49.3
Minor BPS
44.3
-0.4
2.1
51.68
45.2

Associated Gene:

Gene:
SHMT1
Ensembl Gene ID:
ENSAPLG00000011293
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011777
2692112 - 2695818
3707