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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2695081_2695222_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2695081 - 2695222
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
TGTTCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
CCCGTGGTGACT
Flanking Amino Acid:
SIACNKNTCPGDVSALRPSG
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
68.2
38.6
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
79.4
0.66
0.9
73.5
37
Minor 5ss
33
-1.9
3.4
44.8
43.3
Minor BPS
36.8
-0.9
2.5
48.89
45.4

Associated Gene:

Gene:
SHMT1
Ensembl Gene ID:
ENSAPLG00000011293
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011777
2692112 - 2695818
3707