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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2700406_2701786_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2700406 - 2701786
Intron Length:
1381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCCA
5'SS Class:
major
3'SS Sequence:
CTTGCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TTTCCTCCAGCT
Flanking Amino Acid:
FQKWKLIGLQRTASPAGVNV
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
65.6
40
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
79.7
0.67
0.9
76.5
37.6
Minor 5ss
30.4
-2.2
3.3
39.6
45.9
Minor BPS
47.5
-0.1
2.1
74.84
41.6

Associated Gene:

Gene:
SMCR8
Ensembl Gene ID:
ENSAPLG00000006011
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006224
2698952 - 2717577
18626