About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2706491_2706837_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2706491 - 2706837
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
CCATCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CACTGATTACCT
Flanking Amino Acid:
YEYDYQMFGQNVTVVMTSVS
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
71.2
0.53
1
61
37.5
Major PPT
78.8
0.65
0.8
72.7
31.8
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
44.7
-0.3
2.2
61.69
47.8

Associated Gene:

Gene:
TOP3A
Ensembl Gene ID:
ENSAPLG00000006039
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025703
2705149 - 2714699
9551
ENSAPLT00000006340
2705149 - 2715699
10551