About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2708400_2708621_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2708400 - 2708621
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTATATTCAATT
Flanking Amino Acid:
DVRQELDLRIGAAFTRFQTL
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.6
32.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
87.2
0.84
0.8
80.5
37
Minor 5ss
35
-1.7
2.9
44.9
43.1
Minor BPS
59.5
0.38
1.7
78.17
38.2

Associated Gene:

Gene:
TOP3A
Ensembl Gene ID:
ENSAPLG00000006039
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025703
2705149 - 2714699
9551
ENSAPLT00000006340
2705149 - 2715699
10551