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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2718564_2719329_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2718564 - 2719329
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGCTC
5'SS Class:
major
3'SS Sequence:
CCCCTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAG
U12 Branch Point Sequence:
TTTTCCTTAGCC
Flanking Amino Acid:
LLPPAPPPAPEPRACPAPPE
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
65.8
39.9
Major BPS
54.9
0.12
1.6
53.6
43.8
Major PPT
81.2
0.7
0.7
75.5
26.5
Minor 5ss
29.9
-2.3
3.4
41.5
45.2
Minor BPS
82.8
1.01
1.4
90.7
29.9

Associated Gene:

Gene:
MIEF2
Ensembl Gene ID:
ENSAPLG00000006724
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006976
2717327 - 2720249
2923