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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2719508_2720098_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2719508 - 2720098
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGATG
5'SS Class:
major
3'SS Sequence:
TCTCTCCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACACAT
U12 Branch Point Sequence:
TCACACACATCC
Flanking Amino Acid:
LAIATLAVKRLIDRATSPRD
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
69.5
42.7
Major BPS
57.6
0.19
1
64.6
32.2
Major PPT
82.4
0.73
0.7
73.7
31.4
Minor 5ss
30
-2.3
3.2
31.4
42.6
Minor BPS
38.7
-0.8
2
47.47
41

Associated Gene:

Gene:
MIEF2
Ensembl Gene ID:
ENSAPLG00000006724
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006976
2717327 - 2720249
2923