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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2720938_2722475_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2720938 - 2722475
Intron Length:
1538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCATTCCCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GCTCTCTCACCA
Flanking Amino Acid:
GVDLSGNDFKGGYFPEHVKA
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
72.7
0.56
1
75
30.1
Major PPT
71.9
0.49
0.8
65.6
30.3
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
47.4
-0.2
1.8
57.33
42

Associated Gene:

Gene:
FLII
Ensembl Gene ID:
ENSAPLG00000006754
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040162
2720875 - 2754022
33148
ENSAPLT00000019916
2720875 - 2728797
7923
ENSAPLT00000007036
2720875 - 2728797
7923
ENSAPLT00000042859
2720875 - 2736997
16123