About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2722587_2723098_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2722587 - 2723098
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAG
U12 Branch Point Sequence:
GAGGGCTCAGCC
Flanking Amino Acid:
PEELAALQKLEHLSVSHNNL
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.8
33.2
Major BPS
45.3
-0.3
1.7
51.1
46.3
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
26.4
-2.7
3.2
31
36.4
Minor BPS
39.8
-0.8
2.1
44.49
43.3

Associated Gene:

Gene:
FLII
Ensembl Gene ID:
ENSAPLG00000006754
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019916
2720875 - 2728797
7923
ENSAPLT00000042859
2720875 - 2736997
16123
ENSAPLT00000040162
2720875 - 2754022
33148