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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2722587_2723580_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2722587 - 2723580
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
TTTGCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACCCAC
U12 Branch Point Sequence:
CCCACCCCACCC
Flanking Amino Acid:
PEELAALQKLDLSYNQLTEC
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.8
33.2
Major BPS
46.9
-0.1
1.1
53.7
32.6
Major PPT
78.3
0.64
0.8
70.1
36.5
Minor 5ss
26.4
-2.7
3.2
31
36.4
Minor BPS
39.3
-0.8
2
43.69
44

Associated Gene:

Gene:
FLII
Ensembl Gene ID:
ENSAPLG00000006754
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007036
2720875 - 2728797
7923