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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2724445_2724530_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2724445 - 2724530
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGCGTGCC
5'SS Class:
weak_major
3'SS Sequence:
CCTCCATCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
CGTCCCTCACCC
Flanking Amino Acid:
LSRNQLTSLPSAICKLTKLK
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55
0.12
1.3
51.7
40
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
70.8
0.47
0.8
61.5
33.8
Minor 5ss
29.3
-2.4
3.3
39.7
39.4
Minor BPS
49.2
-0
1.9
61.01
43.9

Associated Gene:

Gene:
FLII
Ensembl Gene ID:
ENSAPLG00000006754
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007036
2720875 - 2728797
7923
ENSAPLT00000042859
2720875 - 2736997
16123
ENSAPLT00000040162
2720875 - 2754022
33148
ENSAPLT00000019916
2720875 - 2728797
7923