About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2724856_2725048_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2724856 - 2725048
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACCC
5'SS Class:
strong_major
3'SS Sequence:
ATGTCCTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
GAGCACTGAACT
Flanking Amino Acid:
EAIHFLTEVEVLDVRENPNL
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
68.6
36.5
Major BPS
62
0.3
1
53
34.1
Major PPT
67.2
0.39
1
62.8
39
Minor 5ss
27.8
-2.5
2.9
34.2
41.4
Minor BPS
51
0.11
1.7
66.22
43.2

Associated Gene:

Gene:
FLII
Ensembl Gene ID:
ENSAPLG00000006754
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007036
2720875 - 2728797
7923
ENSAPLT00000042859
2720875 - 2736997
16123
ENSAPLT00000040162
2720875 - 2754022
33148
ENSAPLT00000019916
2720875 - 2728797
7923