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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2725197_2725314_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2725197 - 2725314
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGCTTTTCACCC
Flanking Amino Acid:
SPATVAAAAAGSGTKDPLAR
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.7
81.3
35.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
66.5
0.37
0.8
56.8
33.5
Minor 5ss
21.8
-3.3
3.8
31.5
42.8
Minor BPS
47.8
-0.1
1.8
58.24
41.2

Associated Gene:

Gene:
FLII
Ensembl Gene ID:
ENSAPLG00000006754
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019916
2720875 - 2728797
7923
ENSAPLT00000007036
2720875 - 2728797
7923
ENSAPLT00000042859
2720875 - 2736997
16123
ENSAPLT00000040162
2720875 - 2754022
33148