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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2725740_2725832_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2725740 - 2725832
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCGGG
5'SS Class:
major
3'SS Sequence:
CATCCCTCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TCCCCCTCCATC
Flanking Amino Acid:
YEADCYIVLKTFLDENGSLN
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.3
49.1
47.6
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
72
0.49
0.8
65.5
29.9
Minor 5ss
40.2
-1.1
3.5
56
48.2
Minor BPS
46.7
-0.2
2
55.52
43.3

Associated Gene:

Gene:
FLII
Ensembl Gene ID:
ENSAPLG00000006754
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042859
2720875 - 2736997
16123
ENSAPLT00000040162
2720875 - 2754022
33148
ENSAPLT00000019916
2720875 - 2728797
7923
ENSAPLT00000007036
2720875 - 2728797
7923