Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2726176_2726258_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2726176 - 2726258

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCGCAG

5'SS Class:

major

3'SS Sequence:

CCCTCTCCTCGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

CTCACCGCAGCC

Flanking Amino Acid:

FTVEDTQYVTRLYRVYGKKN

Intron Amino Acid Position:

568

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.8

0.33

1.3

51.4

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

55.6

0.13

1.6

61.1

35.1

Minor 5ss

34.2

-1.8

3.5

46.2

49.1

Minor BPS

40.5

-0.7

2.3

45.8

Associated Gene:

Gene:

FLII

Ensembl Gene ID:

ENSAPLG00000006754

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019916

2720875 - 2728797

7923

ENSAPLT00000007036

2720875 - 2728797

7923

ENSAPLT00000042859

2720875 - 2736997

16123

ENSAPLT00000040162

2720875 - 2754022

33148