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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2727454_2727543_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2727454 - 2727543
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCGGTGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATCC
Flanking Amino Acid:
TRNLEGTECQVFKSKFKNWD
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
65.9
40.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
51.4
0.03
1.1
50.8
31.6
Minor 5ss
24.4
-2.9
3.1
29.4
43.3
Minor BPS
69
0.58
1.8
82.93
36.8

Associated Gene:

Gene:
FLII
Ensembl Gene ID:
ENSAPLG00000006754
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040162
2720875 - 2754022
33148
ENSAPLT00000019916
2720875 - 2728797
7923
ENSAPLT00000007036
2720875 - 2728797
7923
ENSAPLT00000042859
2720875 - 2736997
16123