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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2727733_2727832_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2727733 - 2727832
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACCG
5'SS Class:
major
3'SS Sequence:
TTTGGGGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGGAAT
U12 Branch Point Sequence:
GGGGGCTGAGCG
Flanking Amino Acid:
AETPPMPLSEAEQLMEEWNE
Intron Amino Acid Position:
808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
60
44.9
Major BPS
45.8
-0.2
1.4
51
41.5
Major PPT
65.4
0.35
1
57.8
43.2
Minor 5ss
30.9
-2.2
3.3
39.5
45.9
Minor BPS
38.6
-1
2
37.67
44.4

Associated Gene:

Gene:
FLII
Ensembl Gene ID:
ENSAPLG00000006754
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007036
2720875 - 2728797
7923
ENSAPLT00000042859
2720875 - 2736997
16123
ENSAPLT00000040162
2720875 - 2754022
33148
ENSAPLT00000019916
2720875 - 2728797
7923