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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2728294_2728415_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2728294 - 2728415
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAC
U12 Branch Point Sequence:
GTCACCCCACGC
Flanking Amino Acid:
FESLFPGKLEVVRMTQQQEN
Intron Amino Acid Position:
930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
46.4
-0.2
1.2
52.1
34.1
Major PPT
71.2
0.48
0.9
64.9
30.6
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
36.8
-1
2.1
44.76
43

Associated Gene:

Gene:
FLII
Ensembl Gene ID:
ENSAPLG00000006754
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040162
2720875 - 2754022
33148
ENSAPLT00000019916
2720875 - 2728797
7923
ENSAPLT00000007036
2720875 - 2728797
7923
ENSAPLT00000042859
2720875 - 2736997
16123