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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2728571_2728678_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2728571 - 2728678
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCCCC
5'SS Class:
major
3'SS Sequence:
GCTCCTCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CGCTCCTCACCC
Flanking Amino Acid:
IRTNGGALCTRCIQINTDAG
Intron Amino Acid Position:
981

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.3
61
42
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
66.8
0.38
0.9
58
37.5
Minor 5ss
34.6
-1.8
2.9
43.6
43.6
Minor BPS
49.5
-0
1.9
59.01
45.8

Associated Gene:

Gene:
FLII
Ensembl Gene ID:
ENSAPLG00000006754
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042859
2720875 - 2736997
16123
ENSAPLT00000040162
2720875 - 2754022
33148
ENSAPLT00000007036
2720875 - 2728797
7923