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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2731900_2731994_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2731900 - 2731994
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCTGT
5'SS Class:
major
3'SS Sequence:
TGTTTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACCAAC
U12 Branch Point Sequence:
CCAGCACCAACC
Flanking Amino Acid:
VSRLQDTSCLSNSTATPKLP
Intron Amino Acid Position:
1021

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
65.8
42.7
Major BPS
46.8
-0.2
1.1
52
30.4
Major PPT
86.2
0.81
0.8
77.7
36.7
Minor 5ss
38.7
-1.3
3.4
55.4
48.8
Minor BPS
39.6
-0.8
2
45.3
42.7

Associated Gene:

Gene:
LLGL1
Ensembl Gene ID:
ENSAPLG00000021642
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039465
2731798 - 2741211
9414
ENSAPLT00000027983
2731798 - 2815537
83740
ENSAPLT00000017516
2731798 - 2741211
9414