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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2732463_2732699_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2732463 - 2732699
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TCGCCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCGGCAC
U12 Branch Point Sequence:
CCTGCGGCACCC
Flanking Amino Acid:
MLISSEEQFKVFTLPKVSAK
Intron Amino Acid Position:
895

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
38
-0.7
1.4
36.7
42.3
Major PPT
70.4
0.46
0.8
61.5
34.9
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
31.7
-1.4
2.6
41.23
45.7

Associated Gene:

Gene:
LLGL1
Ensembl Gene ID:
ENSAPLG00000021642
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039465
2731798 - 2741211
9414
ENSAPLT00000027983
2731798 - 2815537
83740
ENSAPLT00000017516
2731798 - 2741211
9414