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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2732712_2811455_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2732712 - 2811455
Intron Length:
78744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCCC
5'SS Class:
major
3'SS Sequence:
CATCTCCTCGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CCATGCTCATCT
Flanking Amino Acid:
NGDYVFMRWKEQFKVFTLPK
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
63.1
41.8
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
53.3
0.08
1.7
61.5
34.5
Minor 5ss
38.5
-1.3
3.1
51.7
45
Minor BPS
44.7
-0.3
2.2
60.58
48.6

Associated Gene:

Gene:
LLGL1
Ensembl Gene ID:
ENSAPLG00000021642
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027983
2731798 - 2815537
83740