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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2772462_2772745_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2772462 - 2772745
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGCCG
5'SS Class:
major
3'SS Sequence:
TGCCCCCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATAAAA
U12 Branch Point Sequence:
TGCCCCCCTACA
Flanking Amino Acid:
PSSMELKAMVAGRSAKRQLF
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
55.7
42.9
Major BPS
49
-0
1.2
57.3
36.3
Major PPT
73
0.52
0.8
65.1
30.7
Minor 5ss
25.8
-2.8
3
27.8
37.2
Minor BPS
43.2
-0.5
2.1
55.32
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007292
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007560
2770676 - 2773394
2719