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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2799678_2800600_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2799678 - 2800600
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TGTTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TATTCTTCACCC
Flanking Amino Acid:
LTCIYTKKRGQRPDFTDAII
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.3
75.8
34.3
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
34.4
-1.8
3.2
42.7
38
Minor BPS
58.3
0.24
1.8
71.71
39.5

Associated Gene:

Gene:
DRG2
Ensembl Gene ID:
ENSAPLG00000007342
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007667
2798228 - 2806276
8049