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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2800690_2801121_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2800690 - 2801121
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAC
U12 Branch Point Sequence:
ACAGCAGTAATC
Flanking Amino Acid:
LARRPHSVVISCGMKLNLDY
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
70.5
0.51
1
72
33.1
Major PPT
75.1
0.57
1
68.5
42.1
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
42.8
-0.5
2.2
50.28
40.7

Associated Gene:

Gene:
DRG2
Ensembl Gene ID:
ENSAPLG00000007342
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007667
2798228 - 2806276
8049