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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2801199_2801686_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2801199 - 2801686
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TCCTTTGACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TTTCCTTTGACT
Flanking Amino Acid:
GNRVYMPCLYVYNKIDQISM
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
81.3
32.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
69.4
0.44
0.9
69.2
36
Minor 5ss
36.2
-1.6
2.8
45
36
Minor BPS
80.7
1.05
1
92.82
28.5

Associated Gene:

Gene:
DRG2
Ensembl Gene ID:
ENSAPLG00000007342
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007667
2798228 - 2806276
8049