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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2802073_2802215_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2802073 - 2802215
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTGTTCTTAAGT
Flanking Amino Acid:
NKSKPNIYFKPKKGGGISFN
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.1
39.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
79.3
0.66
0.8
73
31.9
Minor 5ss
27.9
-2.5
3.2
39.3
46.1
Minor BPS
67.1
0.62
1.7
78.77
43.9

Associated Gene:

Gene:
DRG2
Ensembl Gene ID:
ENSAPLG00000007342
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007667
2798228 - 2806276
8049