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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2802289_2802708_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2802289 - 2802708
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
AGGTCCTAACGT
Flanking Amino Acid:
MLDATKGEVQRALLEKELES
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.2
39.6
Major BPS
72
0.55
1
71.8
31.4
Major PPT
75.7
0.58
0.8
69
31.6
Minor 5ss
28
-2.5
3
33.4
41.6
Minor BPS
45.6
-0.2
2.2
62.52
47.4

Associated Gene:

Gene:
DRG2
Ensembl Gene ID:
ENSAPLG00000007342
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007667
2798228 - 2806276
8049