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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2805470_2806212_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2805470 - 2806212
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGGGGGGC
5'SS Class:
major
3'SS Sequence:
CCCTGTCACGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TGCCTGTTAACC
Flanking Amino Acid:
KEIARTQKNKATEYHLGLLK
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.1
0.33
1.1
52.9
38.4
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
66.7
0.38
0.9
61
34.1
Minor 5ss
22.3
-3.2
3.4
22.4
38
Minor BPS
51.6
0.03
2.1
63.92
41.7

Associated Gene:

Gene:
DRG2
Ensembl Gene ID:
ENSAPLG00000007342
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007667
2798228 - 2806276
8049