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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_280790_338897_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
280790 - 338897
Intron Length:
58108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
CGCTGCTTAACC
Flanking Amino Acid:
RNYEKGLEWYRNVMPKTLDG
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
77.4
0.62
0.9
72.7
37.5
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
61.3
0.33
1.9
66.74
45

Associated Gene:

Gene:
HS3ST4
Ensembl Gene ID:
ENSAPLG00000021762
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001876
280153 - 339239
59087