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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2811558_2812249_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2811558 - 2812249
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATAAC
5'SS Class:
major
3'SS Sequence:
CCTTTTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
CTTGCCTTTATT
Flanking Amino Acid:
ADEDVDRKHWGKFQAFYQYA
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
74.7
35.6
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
83.8
0.76
0.8
75.9
38
Minor 5ss
34.9
-1.7
2.8
36.9
40.6
Minor BPS
63.8
0.52
1.8
79.54
43

Associated Gene:

Gene:
LLGL1
Ensembl Gene ID:
ENSAPLG00000021642
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027983
2731798 - 2815537
83740