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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2812358_2813097_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2812358 - 2813097
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACGAAAT
U12 Branch Point Sequence:
GGTGACGAAATC
Flanking Amino Acid:
GYLKIKGLTEEYPTLTTFFE
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
48.3
-0.1
1.2
53
39.1
Major PPT
79.9
0.67
0.7
73.3
31.6
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
39
-0.8
2.3
48.34
41.7

Associated Gene:

Gene:
LLGL1
Ensembl Gene ID:
ENSAPLG00000021642
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027983
2731798 - 2815537
83740