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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2813158_2814934_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2813158 - 2814934
Intron Length:
1777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CCGTGCTGATGG
Flanking Amino Acid:
NAYEVEVVMQHVDMENSYLC
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
77.5
0.62
0.8
69.7
36.7
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
36.7
-1.1
2.2
35.02
46.1

Associated Gene:

Gene:
LLGL1
Ensembl Gene ID:
ENSAPLG00000021642
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027983
2731798 - 2815537
83740