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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2815796_2816793_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2815796 - 2816793
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTTTCAACACCT
Flanking Amino Acid:
GRGRGYAPPAERKRFYQNVS
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.5
0.64
0.7
70.1
30.8
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
44.5
-0.3
2.3
70.51
45.8

Associated Gene:

Gene:
ATPAF2
Ensembl Gene ID:
ENSAPLG00000007932
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008252
2776379 - 2820248
43870