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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2816839_2817145_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2816839 - 2817145
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCCTCTTTAATT
Flanking Amino Acid:
YQNVSISQGEGGFEINLDHR
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
39.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75
0.56
0.9
66.1
39.9
Minor 5ss
38.7
-1.3
2.9
47.6
48
Minor BPS
77.5
0.94
1.1
82.98
39.3

Associated Gene:

Gene:
ATPAF2
Ensembl Gene ID:
ENSAPLG00000007932
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008252
2776379 - 2820248
43870