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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2817292_2817754_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2817292 - 2817754
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
CTTTGTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAA
U12 Branch Point Sequence:
GTGCCCTAAACT
Flanking Amino Acid:
DTIKFYTMHLTTLCNTALDN
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
69.4
36.6
Major BPS
60.4
0.26
1.1
61.5
32.5
Major PPT
78.8
0.65
0.8
73.3
31.7
Minor 5ss
34.4
-1.8
2.8
37.9
40.9
Minor BPS
64.4
0.53
1.7
78.35
43.5

Associated Gene:

Gene:
ATPAF2
Ensembl Gene ID:
ENSAPLG00000007932
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008252
2776379 - 2820248
43870