About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2817853_2818484_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2817853 - 2818484
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGGAG
5'SS Class:
major
3'SS Sequence:
TGCCGTGTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTCCTGATACCC
Flanking Amino Acid:
AVKFLETDTVCYRVEEPSAL
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
58.4
40.5
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
66.3
0.37
1
56.6
43.4
Minor 5ss
34.8
-1.7
3.5
42.2
46.3
Minor BPS
40.9
-0.7
2.3
55.78
42.7

Associated Gene:

Gene:
ATPAF2
Ensembl Gene ID:
ENSAPLG00000007932
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008252
2776379 - 2820248
43870