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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2819252_2819883_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2819252 - 2819883
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CCCTTCTGAACT
Flanking Amino Acid:
LLSRLEEEYQIQRWGKVEWA
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
72.1
40.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
83.2
0.75
0.7
80.8
24.5
Minor 5ss
38.9
-1.2
2.9
49.7
46.6
Minor BPS
62.3
0.47
1.5
71.74
45.4

Associated Gene:

Gene:
ATPAF2
Ensembl Gene ID:
ENSAPLG00000007932
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008252
2776379 - 2820248
43870