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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2822026_2823519_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2822026 - 2823519
Intron Length:
1494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CGTTGCCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
TCCCCCTGATCC
Flanking Amino Acid:
DEDLPDDVRELLVDKTTLVN
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
67.5
0.39
0.9
58.3
38.4
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
50
-0
1.8
60.6
44.4

Associated Gene:

Gene:
DRC3
Ensembl Gene ID:
ENSAPLG00000008088
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008405
2821600 - 2835255
13656