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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2828767_2830053_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2828767 - 2830053
Intron Length:
1287

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCT|GCAGGCATA
5'SS Class:
weak_major
3'SS Sequence:
GTGTCACATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
AATACCTTGACT
Flanking Amino Acid:
LAYLPGVDDLLKDFVSVCEN
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.3
0.1
1.5
61.9
42.6
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
66.7
0.38
1
59
41.3
Minor 5ss
34.2
-1.8
4.3
57.4
47
Minor BPS
75.4
0.88
1.2
83.71
36.5

Associated Gene:

Gene:
DRC3
Ensembl Gene ID:
ENSAPLG00000008088
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008405
2821600 - 2835255
13656