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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2830159_2831081_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2830159 - 2831081
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGT|GCGTGTTCT
5'SS Class:
weak_major
3'SS Sequence:
TCTTTTCAAAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTACTTACAT
Flanking Amino Acid:
AKQKELEYHKVAFVEYLNGS
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.3
0.01
1.4
56.5
42.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
54.9
0.11
1.7
66.4
38.7
Minor 5ss
35.1
-1.7
3.9
50.4
46
Minor BPS
63.9
0.52
1.9
86.49
39

Associated Gene:

Gene:
DRC3
Ensembl Gene ID:
ENSAPLG00000008088
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008405
2821600 - 2835255
13656