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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2831204_2832381_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2831204 - 2832381
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTGTGTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
AATACCCTATTT
Flanking Amino Acid:
LDFKRVSDTTRELAVSKYHY
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
82.1
0.72
0.9
80.5
37
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
49
0
1.9
69.52
41.1

Associated Gene:

Gene:
DRC3
Ensembl Gene ID:
ENSAPLG00000008088
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008405
2821600 - 2835255
13656