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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2856898_2857318_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2856898 - 2857318
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGCTCT
5'SS Class:
weak_major
3'SS Sequence:
GTTTCTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AGCTTTCTAACA
Flanking Amino Acid:
ICDIINETEEGPKDAIRALK
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
65
41.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
84.7
0.78
0.8
81.8
30.2
Minor 5ss
57.5
0.26
2.3
65.8
45.3
Minor BPS
53.4
0.1
1.6
62.51
37.8

Associated Gene:

Gene:
TOM1L2
Ensembl Gene ID:
ENSAPLG00000008391
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034159
2856686 - 2886550
29865
ENSAPLT00000031612
2856686 - 2886550
29865
ENSAPLT00000028754
2856813 - 2886550
29738
ENSAPLT00000008771
2848363 - 2885550
37188
ENSAPLT00000043210
2855635 - 2885550
29916