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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2857398_2859035_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2857398 - 2859035
Intron Length:
1638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TATGTGTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATGT
Flanking Amino Acid:
NYREVMLALTVLETCVKNCG
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.8
38
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.4
0.39
1.1
62.1
44.1
Minor 5ss
27.1
-2.6
3
31.8
42.6
Minor BPS
61.2
0.43
1.9
82.72
39.3

Associated Gene:

Gene:
TOM1L2
Ensembl Gene ID:
ENSAPLG00000008391
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034159
2856686 - 2886550
29865
ENSAPLT00000031612
2856686 - 2886550
29865
ENSAPLT00000028754
2856813 - 2886550
29738
ENSAPLT00000008771
2848363 - 2885550
37188
ENSAPLT00000043210
2855635 - 2885550
29916